Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| HNSC | rs55794417 | chr20:44431819 | T/C | 5.56E-7 | 409 | 16.35 | 14.98 | 9.13 | KM Plot |
| HNSC | rs55850069 | chr1:173788349 | G/A | 2.4E-6 | 410 | 16.68 | 14.77 | 3.73 | KM Plot |
| HNSC | rs55871495 | chr1:161730974 | C/G | 7.64E-5 | 404 | 16.17 | 16.38 | 4.3 | KM Plot |
| HNSC | rs558839 | chr6:74345026 | A/C | 3.14E-5 | 412 | 17.13 | 13.1 | 12.73 | KM Plot |
| HNSC | rs560634 | chr19:7831953 | G/T | 5.65E-5 | 412 | 16.07 | 17.53 | 13.17 | KM Plot |
| HNSC | rs56077197 | chr1:161731255 | A/C | 7.83E-5 | 403 | 16.17 | 16.38 | 4.3 | KM Plot |
| HNSC | rs56124956 | chr1:161725792 | T/C | 6.28E-5 | 406 | 16.17 | 17.3 | 4.3 | KM Plot |
| HNSC | rs56261048 | chr20:44439646 | G/C | 4.79E-7 | 410 | 16.35 | 15.3 | 9.13 | KM Plot |
| HNSC | rs569263 | chr6:74360065 | A/T | 5.41E-5 | 409 | 12.03 | 13.12 | 17.12 | KM Plot |
| HNSC | rs57046861 | chr1:213075893 | C/A | 1.7E-5 | 410 | 16.17 | 19.72 | 5.03 | KM Plot |
| HNSC | rs5751804 | chr22:24490105 | A/C | 1.92E-5 | 411 | 10.02 | 14.67 | 16.4 | KM Plot |
| HNSC | rs5751810 | chr22:24566579 | G/A | 2.36E-6 | 412 | 16.3 | 17.07 | 8.63 | KM Plot |
| HNSC | rs5751811 | chr22:24570772 | G/A | 2.38E-6 | 411 | 16.3 | 18.17 | 8.63 | KM Plot |
| HNSC | rs5751814 | chr22:24590049 | G/C | 8.8E-7 | 407 | 16.5 | 14.02 | 5.68 | KM Plot |
| HNSC | rs5760186 | chr22:24435954 | G/A | 1.41E-6 | 410 | 5.68 | 14.47 | 16.35 | KM Plot |